At a brief session at the last workshop we built several simple applications using the Sapling API.
The first is a simple replica of the svr_all_genomes script:
The second allows one to recall all the proteins in the vibrio genomes:
The third allows one to recall the proteins in a given fasta file, and compare to a file of annotations for the proteins in that genome:
compare_functions fasta-file function-file
The last does a potentially dubious translation of the hits from a myRAST metagenomics output run into proteins.
hits-to-protein dna-fasta hits-file genetic-code
