The SEED Servers
A network API for accessing the SEED data.

RAST Workshop Presentation Links

These links open in new windows, allowing you to follow the presentations in sequence or explore topics of interest.

  1. Overview
  2. The Components
  3. The SEED and the P-SEED
  4. P-SEED and A-SEED Servers
  5. RAST
  6. myRAST
  7. Annotations
  8. Subsystems
  9. FIGfams
  10. Submitting a job with web-based RAST
  11. Annotations with RAST
  12. Annotations with myRAST
  13. Exporting from RAST
  14. Exporting from myRAST

Search

  • Master Index

API Listings

  • Sapling Server
  • Annotation Server
  • RAST Server
  • Model Server
  • Server Scripts
  • Server Utilities API

SEED Utilities

  • Scan for Matches (patscan)

About this Archive

Find recent content on the main index or look in the archives to find all content.

Categories

  • Coding Examples (8)
  • News (3)
  • Technical Notes (1)
  • Tutorials (16)
  • Workshop (2)

Pages

  • Introduction
  • RAST Workshop Presentation Links
  • Installation
    • Distribution of the SEED server packages
  • ModelTutorials
    • Annotations to Reactions
    • Editing Your Model
    • Generating Predictions on Your Model
    • Model Phenotypes
    • ModelView Presentation PDFs
    • Reactions to Initial Model
    • Viewing your Initial Model
  • Presentations
  • T1
    • A Simple Way to Check for Genes that Bridge Contigs
    • Annotating a Genome
    • Annotating a Genome Using myRAST
    • Annotation with RAST
    • Annotations
    • Building a Metabolic Reconstruction
    • Downloading and Checking Results
    • Exporting from RAST
    • Exporting from myRAST
    • FIGfams
    • Modeling Overview
    • Monitoring Your Job's Progress
    • Overview
    • P-SEED and A-SEED Servers
    • RAST
    • Submitting a job with web-based RAST
    • Subsystems
    • Support for Exploring Pangenomes
    • The Components
    • The SEED and the P-SEED
    • Tutorial Agenda
    • Uploading Sequence Data to RAST
    • Uploading a genome to RAST
    • What is a metabolic model?
    • myRAST
  • Usage
    • 1. Summary of the Individual Servers
    • 2. Command Line Services
    • 3. The RAST batch interface

Presentations

  • Analyzing Your Genomes with the SEED Servers
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