Some simple Sapling examples

At a brief session at the last workshop we built several simple applications using the Sapling API.

The first is a simple replica of the svr_all_genomes script:


The second allows one to recall all the proteins in the vibrio genomes:

The third allows one to recall the proteins in a given fasta file, and compare to a file of annotations for the proteins in that genome:

    compare_functions fasta-file function-file

The last does a potentially dubious translation of the hits from a myRAST metagenomics output run into proteins.

    hits-to-protein dna-fasta hits-file genetic-code

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